Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D.R., Fernandes, G.R., Tap, J., Bruls, T., Batto, J.M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H.B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E.G., Wang, J., Guarner, F., Pedersen, O., De Vos, W.M., Brunak, S., Dore, J., Meta, H.I.T.C., Antolin, M., Artiguenave, F., Blottiere, H.M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C., Denariaz, G., Dervyn, R., Foerstner, K.U., Friss, C., Van de Guchte, M., Guedon, E., Haimet, F., Huber, W., Van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G., Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., Merieux, A., Melo Minardi, R., M’Rini, C., Muller, J., Oozeer, R., Parkhill, J., Renault, P., Rescigno, M., Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela, E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S.D. and Bork, P., 2011. Enterotypes of the human gut microbiome. Nature 473: 174-180.

'Enterotypes of the human gut microbiome ' () 473 Nature : 174 -180.

Enterotypes of the human gut microbiomeNature473174180)| false
• Search Google Scholar

Ashida, H., Ogawa, M., Kim, M., Mimuro, H. and Sasakawa, C., 2012. Bacteria and host interactions in the gut epithelial barrier. Nature Chemical Biology 8: 36-45.

'Bacteria and host interactions in the gut epithelial barrier ' () 8 Nature Chemical Biology : 36 -45.

Bacteria and host interactions in the gut epithelial barrierNature Chemical Biology83645)| false
• Search Google Scholar

Backhed, F., Ley, R.E., Sonnenburg, J.L., Peterson, D.A. and Gordon, J.I., 2005. Host-bacterial mutualism in the human intestine. Science 307: 1915-1920.

'Host-bacterial mutualism in the human intestine ' () 307 Science : 1915 -1920.

Host-bacterial mutualism in the human intestineScience30719151920)| false
• Search Google Scholar

Claesson, M.J., O’Sullivan, O., Wang, Q., Nikkila, J., Marchesi, J.R., Smidt, H., De Vos, W.M., Ross, R.P. and O’Toole, P.W., 2009. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS ONE 4: e6669.

'Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine ' () 4 PLoS ONE : e6669.

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestinePLoS ONE4e6669)| false
• Search Google Scholar

David, L.A., Maurice, C.F., Carmody, R.N., Gootenberg, D.B., Button, J.E., Wolfe, B.E., Ling, A.V., Devlin, A.S., Varma, Y., Fischbach, M.A., Biddinger, S.B., Dutton, R.J. and Turnbaugh, P.J., 2014. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505: 559-563.

'Diet rapidly and reproducibly alters the human gut microbiome ' () 505 Nature : 559 -563.

Diet rapidly and reproducibly alters the human gut microbiomeNature505559563)| false
• Search Google Scholar

Degnan, P.H., Pusey, A.E., Lonsdorf, E.V., Goodall, J., Wroblewski, E.E., Wilson, M.L., Rudicell, R.S., Hahn, B.H. and Ochman, H., 2012. Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park. Proceedings of the National Academy of Sciences of the USA 109: 13034-13039.

'Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park ' () 109 Proceedings of the National Academy of Sciences of the USA : 13034 -13039.

Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National ParkProceedings of the National Academy of Sciences of the USA1091303413039)| false
• Search Google Scholar

Geurts, L., Lazarevic, V., Derrien, M., Everard, A., Van Roye, M., Knauf, C., Valet, P., Girard, M., Muccioli, G.G., Francois, P., De Vos, W.M., Schrenzel, J., Delzenne, N.M. and Cani, P.D., 2011. Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue. Frontiers in Microbiology 2: 149.

'Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue ' () 2 Frontiers in Microbiology : 149.

Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissueFrontiers in Microbiology2149)| false
• Search Google Scholar

Gill, S.R., Pop, M., Deboy, R.T., Eckburg, P.B., Turnbaugh, P.J., Samuel, B.S., Gordon, J.I., Relman, D.A., Fraser-Liggett, C.M. and Nelson, K.E., 2006. Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359.

'Metagenomic analysis of the human distal gut microbiome ' () 312 Science : 1355 -1359.

Metagenomic analysis of the human distal gut microbiomeScience31213551359)| false
• Search Google Scholar

Haenen, D., Zhang, J., Souza da Silva, C., Bosch, G., van der Meer, I.M., van Arkel, J., van den Borne, J.J., Perez Gutierrez, O., Smidt, H., Kemp, B., Muller, M. and Hooiveld, G.J., 2013. A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine. Journal of Nutrition 143: 274-283.

'A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine ' () 143 Journal of Nutrition : 274 -283.

A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestineJournal of Nutrition143274283)| false
• Search Google Scholar

Jalanka-Tuovinen, J., Salonen, A., Nikkila, J., Immonen, O., Kekkonen, R., Lahti, L., Palva, A. and De Vos, W.M., 2011. Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS ONE 6: e23035.

'Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms ' () 6 PLoS ONE : e23035.

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptomsPLoS ONE6e23035)| false
• Search Google Scholar

Koren, O., Knights, D., Gonzalez, A., Waldron, L., Segata, N., Knight, R., Huttenhower, C. and Ley, R.E., 2013. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Computational Biology 9: e1002863.

'A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets ' () 9 PLoS Computational Biology : e1002863.

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasetsPLoS Computational Biology9e1002863)| false
• Search Google Scholar

Lahti, L., Elo, L.L., Aittokallio, T. and Kaski, S., 2011. Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays. IEEE/ACM Transactions on Computational Biology and Bioinformatics 8: 217-225.

'Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays ' () 8 IEEE/ACM Transactions on Computational Biology and Bioinformatics : 217 -225.

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arraysIEEE/ACM Transactions on Computational Biology and Bioinformatics8217225)| false
• Search Google Scholar

Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K., Grarup, N., Jorgensen, T., Brandslund, I., Nielsen, H.B., Juncker, A.S., Bertalan, M., Levenez, F., Pons, N., Rasmussen, S., Sunagawa, S., Tap, J., Tims, S., Zoetendal, E.G., Brunak, S., Clement, K., Dore, J., Kleerebezem, M., Kristiansen, K., Renault, P., Sicheritz-Ponten, T., De Vos, W.M., Zucker, J.D., Raes, J., Hansen, T., MetaHIT consortium, Bork, P., Wang, J., Ehrlich, S.D. and Pedersen, O., 2013. Richness of human gut microbiome correlates with metabolic markers. Nature 500: 541-546.

'Richness of human gut microbiome correlates with metabolic markers ' () 500 Nature : 541 -546.

Richness of human gut microbiome correlates with metabolic markersNature500541546)| false
• Search Google Scholar

Ley, R.E., Hamady, M., Lozupone, C., Turnbaugh, P.J., Ramey, R.R., Bircher, J.S., Schlegel, M.L., Tucker, T.A., Schrenzel, M.D., Knight, R. and Gordon, J.I., 2008. Evolution of mammals and their gut microbes. Science 320: 1647-1651.

'Evolution of mammals and their gut microbes ' () 320 Science : 1647 -1651.

Evolution of mammals and their gut microbesScience32016471651)| false
• Search Google Scholar

Moeller, A.H., Degnan, P.H., Pusey, A.E., Wilson, M.L., Hahn, B.H. and Ochman, H., 2012. Chimpanzees and humans harbour compositionally similar gut enterotypes. Nature Communications 3: 1179.

'Chimpanzees and humans harbour compositionally similar gut enterotypes ' () 3 Nature Communications : 1179.

Chimpanzees and humans harbour compositionally similar gut enterotypesNature Communications31179)| false
• Search Google Scholar

Muegge, B.D., Kuczynski, J., Knights, D., Clemente, J.C., Gonzalez, A., Fontana, L., Henrissat, B., Knight, R. and Gordon, J.I., 2011. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332: 970-974.

'Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans ' () 332 Science : 970 -974.

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humansScience332970974)| false
• Search Google Scholar

Murphy, E.F., Cotter, P.D., Healy, S., Marques, T.M., O’Sullivan, O., Fouhy, F., Clarke, S.F., O’Toole, P.W., Quigley, E.M., Stanton, C., Ross, P.R., O’Doherty, R.M. and Shanahan, F., 2010. Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models. Gut 59: 1635-1642.

'Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models ' () 59 Gut : 1635 -1642.

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse modelsGut5916351642)| false
• Search Google Scholar

Ochman, H., Worobey, M., Kuo, C.H., Ndjango, J.B., Peeters, M., Hahn, B.H. and Hugenholtz, P., 2010. Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology 8: e1000546.

'Evolutionary relationships of wild hominids recapitulated by gut microbial communities ' () 8 PLoS Biology : e1000546.

Evolutionary relationships of wild hominids recapitulated by gut microbial communitiesPLoS Biology8e1000546)| false
• Search Google Scholar

Rajilic-Stojanovic, M., Biagi, E., Heilig, H.G., Kajander, K., Kekkonen, R.A., Tims, S. and De Vos, W.M., 2011. Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome. Gastroenterology 141: 1792-1801.

'Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome ' () 141 Gastroenterology : 1792 -1801.

Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndromeGastroenterology14117921801)| false
• Search Google Scholar

Rajilic-Stojanovic, M., Heilig, H.G., Molenaar, D., Kajander, K., Surakka, A., Smidt, H. and De Vos, W.M., 2009. Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environmental Microbiology 11: 1736-1751.

'Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults ' () 11 Environmental Microbiology : 1736 -1751.

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adultsEnvironmental Microbiology1117361751)| false
• Search Google Scholar

Salonen, A., Nikkila, J., Jalanka-Tuovinen, J., Immonen, O., Rajilic- Stojanovic, M., Kekkonen, R.A., Palva, A. and De Vos, W.M., 2010. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis. Journal of Microbiological Methods 81: 127-134.

'Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis ' () 81 Journal of Microbiological Methods : 127 -134.

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysisJournal of Microbiological Methods81127134)| false
• Search Google Scholar

Ter Braak, C.J.F. and Šmilauer, P, 2012. Canoco reference manual and user's guide. Canoco reference manual and user's guide: software for ordination. Microcomputer Power, Ithaca, NY, USA.

Canoco reference manual and user's guide: software for ordination , ().

Canoco reference manual and user's guide: software for ordination)| false
• Search Google Scholar

Thomas, F., Hehemann, J.H., Rebuffet, E., Czjzek, M. and Michel, G., 2011. Environmental and gut bacteroidetes: the food connection. Frontiers in Microbiology 2: 93.

'Environmental and gut bacteroidetes: the food connection ' () 2 Frontiers in Microbiology : 93.

Environmental and gut bacteroidetes: the food connectionFrontiers in Microbiology293)| false
• Search Google Scholar

Van den Bogert, B., De Vos, W.M., Zoetendal, E.G. and Kleerebezem, M., 2011. Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Applied and Environmental Microbiology 77: 2071-2080.

'Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples ' () 77 Applied and Environmental Microbiology : 2071 -2080.

Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samplesApplied and Environmental Microbiology7720712080)| false
• Search Google Scholar